Detailed information of SNP:
|
SNP ID:
sf1003188253(Gbrowse)
Chromosome: chr10 Position: 3188253 |
Major allele:
A
Minor allele: C Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1406 | 50.07% | 49.93% |
| All Indica | 789 | 24.46% | 75.54% |
| All Japonica | 496 | 98.99% | 1.01% |
| Aus | 67 | 5.97% | 94.03% |
| Indica I | 372 | 29.84% | 70.16% |
| Indica II | 209 | 16.75% | 83.25% |
| Indica Intermediate | 208 | 22.60% | 77.40% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 93 | 94.62% | 5.38% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 21.43% | 78.57% |
| Intermediate | 40 | 32.50% | 67.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1003188253 | A->C | LOC_Os10g06210(LOC_Os10g06210.1) | INTRON |