Detailed information of SNP:
|
SNP ID:
sf1003191627(Gbrowse)
Chromosome: chr10 Position: 3191627 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1397 | 68.22% | 31.78% |
| All Indica | 778 | 82.52% | 17.48% |
| All Japonica | 496 | 41.33% | 58.67% |
| Aus | 67 | 92.54% | 7.46% |
| Indica I | 360 | 77.50% | 22.50% |
| Indica II | 213 | 90.14% | 9.86% |
| Indica Intermediate | 205 | 83.41% | 16.59% |
| Temperate Japonica | 334 | 54.49% | 45.51% |
| Tropical Japonica | 94 | 5.32% | 94.68% |
| Japonica Intermediate | 68 | 26.47% | 73.53% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 71.43% | 28.57% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1003191627 | T->C | LOC_Os10g06220(LOC_Os10g06220.1) | INTRON |