Detailed information of SNP:
|
SNP ID:
sf1003192130(Gbrowse)
Chromosome: chr10 Position: 3192130 |
Major allele:
A
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1393 | 53.34% | 46.66% |
| All Indica | 774 | 81.78% | 18.22% |
| All Japonica | 497 | 2.62% | 97.38% |
| Aus | 66 | 92.42% | 7.58% |
| Indica I | 362 | 76.24% | 23.76% |
| Indica II | 206 | 91.26% | 8.74% |
| Indica Intermediate | 206 | 82.04% | 17.96% |
| Temperate Japonica | 335 | 1.19% | 98.81% |
| Tropical Japonica | 94 | 9.57% | 90.43% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 71.43% | 28.57% |
| Intermediate | 42 | 61.90% | 38.10% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1003192130 | T->A | LOC_Os10g06220(LOC_Os10g06220.1) | INTRON |