Detailed information of SNP:
|
SNP ID:
sf1003197085(Gbrowse)
Chromosome: chr10 Position: 3197085 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1391 | 94.97% | 5.03% |
| All Indica | 773 | 91.46% | 8.54% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 65 | 95.38% | 4.62% |
| Indica I | 363 | 94.77% | 5.23% |
| Indica II | 206 | 90.29% | 9.71% |
| Indica Intermediate | 204 | 86.76% | 13.24% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1003197085 | C->A | LOC_Os10g06230(LOC_Os10g06230.1) | Non-Synonymous SNP |