Detailed information of SNP:
|
SNP ID:
sf1003222570(Gbrowse)
Chromosome: chr10 Position: 3222570 |
Major allele:
A
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1409 | 80.20% | 19.80% |
| All Indica | 797 | 99.37% | 0.63% |
| All Japonica | 489 | 45.60% | 54.40% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 212 | 98.58% | 1.42% |
| Indica Intermediate | 210 | 99.05% | 0.95% |
| Temperate Japonica | 333 | 55.26% | 44.74% |
| Tropical Japonica | 90 | 20.00% | 80.00% |
| Japonica Intermediate | 66 | 31.82% | 68.18% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 80.95% | 19.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1003222570 | T->A | INTERGENIC | None |