Detailed information of SNP:
|
SNP ID:
sf1003259478(Gbrowse)
Chromosome: chr10 Position: 3259478 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1392 | 96.12% | 3.88% |
| All Indica | 773 | 95.47% | 4.53% |
| All Japonica | 497 | 97.79% | 2.21% |
| Aus | 66 | 96.97% | 3.03% |
| Indica I | 358 | 97.49% | 2.51% |
| Indica II | 210 | 95.24% | 4.76% |
| Indica Intermediate | 205 | 92.20% | 7.80% |
| Temperate Japonica | 335 | 97.91% | 2.09% |
| Tropical Japonica | 94 | 95.74% | 4.26% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 85.71% | 14.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1003259478 | T->C | LOC_Os10g06330(LOC_Os10g06330.1) | Synonymous |