Detailed information of SNP:
|
SNP ID:
sf1003298559(Gbrowse)
Chromosome: chr10 Position: 3298559 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1251 | 59.15% | 40.85% |
| All Indica | 633 | 65.88% | 34.12% |
| All Japonica | 496 | 58.27% | 41.73% |
| Aus | 67 | 7.46% | 92.54% |
| Indica I | 285 | 67.37% | 32.63% |
| Indica II | 174 | 52.87% | 47.13% |
| Indica Intermediate | 174 | 76.44% | 23.56% |
| Temperate Japonica | 335 | 45.07% | 54.93% |
| Tropical Japonica | 93 | 93.55% | 6.45% |
| Japonica Intermediate | 68 | 75.00% | 25.00% |
| Group VI/Aromatic | 14 | 35.71% | 64.29% |
| Intermediate | 41 | 58.54% | 41.46% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1003298559 | A->G | LOC_Os10g06420(LOC_Os10g06420.1) | Non-Synonymous SNP |