Detailed information of SNP:
|
SNP ID:
sf1003298997(Gbrowse)
Chromosome: chr10 Position: 3298997 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1396 | 92.19% | 7.81% |
| All Indica | 784 | 93.37% | 6.63% |
| All Japonica | 496 | 99.19% | 0.81% |
| Aus | 61 | 22.95% | 77.05% |
| Indica I | 373 | 97.86% | 2.14% |
| Indica II | 202 | 81.19% | 18.81% |
| Indica Intermediate | 209 | 97.13% | 2.87% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 93 | 96.77% | 3.23% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 85.37% | 14.63% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1003298997 | G->T | INTERGENIC | None |