Detailed information of SNP:
|
SNP ID:
sf1003299019(Gbrowse)
Chromosome: chr10 Position: 3299019 |
Major allele:
C
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1411 | 75.19% | 24.81% |
| All Indica | 791 | 94.31% | 5.69% |
| All Japonica | 497 | 41.85% | 58.15% |
| Aus | 67 | 94.03% | 5.97% |
| Indica I | 372 | 94.62% | 5.38% |
| Indica II | 211 | 93.36% | 6.64% |
| Indica Intermediate | 208 | 94.71% | 5.29% |
| Temperate Japonica | 335 | 54.63% | 45.37% |
| Tropical Japonica | 94 | 7.45% | 92.55% |
| Japonica Intermediate | 68 | 26.47% | 73.53% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 71.43% | 28.57% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1003299019 | A->C | INTERGENIC | None |