Detailed information of SNP:
|
SNP ID:
sf1003301017(Gbrowse)
Chromosome: chr10 Position: 3301017 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1393 | 53.77% | 46.23% |
| All Indica | 790 | 83.16% | 16.84% |
| All Japonica | 485 | 11.96% | 88.04% |
| Aus | 63 | 7.94% | 92.06% |
| Indica I | 372 | 88.98% | 11.02% |
| Indica II | 211 | 67.77% | 32.23% |
| Indica Intermediate | 207 | 88.41% | 11.59% |
| Temperate Japonica | 325 | 14.77% | 85.23% |
| Tropical Japonica | 93 | 2.15% | 97.85% |
| Japonica Intermediate | 67 | 11.94% | 88.06% |
| Group VI/Aromatic | 13 | 100.00% | 0.00% |
| Intermediate | 42 | 38.10% | 61.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1003301017 | T->C | LOC_Os10g06430(LOC_Os10g06430.1) | Non-Synonymous SNP |