Detailed information of SNP:
|
SNP ID:
sf1003303657(Gbrowse)
Chromosome: chr10 Position: 3303657 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1398 | 70.89% | 29.11% |
| All Indica | 786 | 92.49% | 7.51% |
| All Japonica | 489 | 32.11% | 67.89% |
| Aus | 67 | 94.03% | 5.97% |
| Indica I | 367 | 90.46% | 9.54% |
| Indica II | 211 | 94.31% | 5.69% |
| Indica Intermediate | 208 | 94.23% | 5.77% |
| Temperate Japonica | 328 | 41.46% | 58.54% |
| Tropical Japonica | 94 | 8.51% | 91.49% |
| Japonica Intermediate | 67 | 19.40% | 80.60% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 71.43% | 28.57% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1003303657 | T->C | LOC_Os10g06430(LOC_Os10g06430.1) | Non-Synonymous SNP |