Detailed information of SNP:
|
SNP ID:
sf1003304151(Gbrowse)
Chromosome: chr10 Position: 3304151 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1396 | 72.06% | 27.94% |
| All Indica | 790 | 92.78% | 7.22% |
| All Japonica | 483 | 33.95% | 66.05% |
| Aus | 67 | 95.52% | 4.48% |
| Indica I | 370 | 90.81% | 9.19% |
| Indica II | 213 | 94.84% | 5.16% |
| Indica Intermediate | 207 | 94.20% | 5.80% |
| Temperate Japonica | 326 | 40.80% | 59.20% |
| Tropical Japonica | 91 | 14.29% | 85.71% |
| Japonica Intermediate | 66 | 27.27% | 72.73% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 73.81% | 26.19% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1003304151 | T->C | LOC_Os10g06430(LOC_Os10g06430.1) | Non-Synonymous SNP |