Detailed information of SNP:
|
SNP ID:
sf1003304762(Gbrowse)
Chromosome: chr10 Position: 3304762 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1302 | 81.57% | 18.43% |
| All Indica | 690 | 66.23% | 33.77% |
| All Japonica | 496 | 99.60% | 0.40% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 321 | 70.72% | 29.28% |
| Indica II | 187 | 65.78% | 34.22% |
| Indica Intermediate | 182 | 58.79% | 41.21% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 93 | 98.92% | 1.08% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 35 | 94.29% | 5.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1003304762 | G->A | LOC_Os10g06430(LOC_Os10g06430.1) | SNPs that introduce stop codons |