Detailed information of SNP:
SNP ID:
sf1003310125(Gbrowse)
Chromosome: chr10 Position: 3310125 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
---|---|---|---|
All | 1418 | 91.26% | 8.74% |
All Indica | 798 | 87.09% | 12.91% |
All Japonica | 497 | 99.80% | 0.20% |
Aus | 67 | 95.52% | 4.48% |
Indica I | 375 | 90.40% | 9.60% |
Indica II | 212 | 85.85% | 14.15% |
Indica Intermediate | 211 | 82.46% | 17.54% |
Temperate Japonica | 335 | 100.00% | 0.00% |
Tropical Japonica | 94 | 98.94% | 1.06% |
Japonica Intermediate | 68 | 100.00% | 0.00% |
Group VI/Aromatic | 14 | 21.43% | 78.57% |
Intermediate | 42 | 85.71% | 14.29% |
Allele Var Effect:
SNP ID | Var | Gene | Effect/Location |
---|---|---|---|
sf1003310125 | A->G | INTERGENIC | None |