Detailed information of SNP:
|
SNP ID:
sf1003330320(Gbrowse)
Chromosome: chr10 Position: 3330320 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1410 | 78.87% | 21.13% |
| All Indica | 798 | 97.74% | 2.26% |
| All Japonica | 489 | 44.58% | 55.42% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 374 | 97.86% | 2.14% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 211 | 95.73% | 4.27% |
| Temperate Japonica | 332 | 55.72% | 44.28% |
| Tropical Japonica | 90 | 15.56% | 84.44% |
| Japonica Intermediate | 67 | 28.36% | 71.64% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 83.33% | 16.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1003330320 | T->C | INTERGENIC | None |