Detailed information of SNP:
|
SNP ID:
sf1003359592(Gbrowse)
Chromosome: chr10 Position: 3359592 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1419 | 87.46% | 12.54% |
| All Indica | 799 | 90.11% | 9.89% |
| All Japonica | 497 | 94.37% | 5.63% |
| Aus | 67 | 10.45% | 89.55% |
| Indica I | 375 | 97.07% | 2.93% |
| Indica II | 213 | 73.71% | 26.29% |
| Indica Intermediate | 211 | 94.31% | 5.69% |
| Temperate Japonica | 335 | 93.43% | 6.57% |
| Tropical Japonica | 94 | 95.74% | 4.26% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 42 | 78.57% | 21.43% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1003359592 | G->A | INTERGENIC | None |