Detailed information of SNP:
|
SNP ID:
sf1003366883(Gbrowse)
Chromosome: chr10 Position: 3366883 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1399 | 77.13% | 22.87% |
| All Indica | 794 | 97.36% | 2.64% |
| All Japonica | 496 | 44.35% | 55.65% |
| Aus | 65 | 78.46% | 21.54% |
| Indica I | 373 | 98.66% | 1.34% |
| Indica II | 210 | 96.67% | 3.33% |
| Indica Intermediate | 211 | 95.73% | 4.27% |
| Temperate Japonica | 335 | 55.52% | 44.48% |
| Tropical Japonica | 93 | 17.20% | 82.80% |
| Japonica Intermediate | 68 | 26.47% | 73.53% |
| Group VI/Aromatic | 8 | 100.00% | 0.00% |
| Intermediate | 36 | 75.00% | 25.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1003366883 | A->G | LOC_Os10g06550(LOC_Os10g06550.1) | Non-Synonymous SNP |