Detailed information of SNP:
|
SNP ID:
sf1003377597(Gbrowse)
Chromosome: chr10 Position: 3377597 |
Major allele:
C
Minor allele: G Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1282 | 95.87% | 4.13% |
| All Indica | 666 | 92.19% | 7.81% |
| All Japonica | 495 | 100.00% | 0.00% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 298 | 88.93% | 11.07% |
| Indica II | 190 | 98.42% | 1.58% |
| Indica Intermediate | 178 | 91.01% | 8.99% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 93 | 100.00% | 0.00% |
| Japonica Intermediate | 67 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 97.50% | 2.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1003377597 | C->G | INTERGENIC | None |