Detailed information of SNP:
|
SNP ID:
sf1003381048(Gbrowse)
Chromosome: chr10 Position: 3381048 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1370 | 59.85% | 40.15% |
| All Indica | 750 | 94.27% | 5.73% |
| All Japonica | 497 | 1.61% | 98.39% |
| Aus | 67 | 94.03% | 5.97% |
| Indica I | 343 | 93.29% | 6.71% |
| Indica II | 208 | 94.23% | 5.77% |
| Indica Intermediate | 199 | 95.98% | 4.02% |
| Temperate Japonica | 335 | 0.30% | 99.70% |
| Tropical Japonica | 94 | 6.38% | 93.62% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 42 | 73.81% | 26.19% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1003381048 | A->G | INTERGENIC | None |