Detailed information of SNP:
|
SNP ID:
sf1003391747(Gbrowse)
Chromosome: chr10 Position: 3391747 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1418 | 77.15% | 22.85% |
| All Indica | 798 | 61.53% | 38.47% |
| All Japonica | 497 | 98.19% | 1.81% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 374 | 52.14% | 47.86% |
| Indica II | 213 | 72.30% | 27.70% |
| Indica Intermediate | 211 | 67.30% | 32.70% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 92.55% | 7.45% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 85.71% | 14.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1003391747 | T->C | INTERGENIC | None |