Detailed information of SNP:
|
SNP ID:
sf1003396274(Gbrowse)
Chromosome: chr10 Position: 3396274 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1419 | 77.87% | 22.13% |
| All Indica | 799 | 61.83% | 38.17% |
| All Japonica | 497 | 99.20% | 0.80% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 52.80% | 47.20% |
| Indica II | 213 | 72.30% | 27.70% |
| Indica Intermediate | 211 | 67.30% | 32.70% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 88.10% | 11.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1003396274 | T->C | INTERGENIC | None |