Detailed information of SNP:
|
SNP ID:
sf1003401283(Gbrowse)
Chromosome: chr10 Position: 3401283 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 59.31% | 40.69% |
| All Indica | 799 | 40.43% | 59.57% |
| All Japonica | 497 | 98.99% | 1.01% |
| Aus | 67 | 5.97% | 94.03% |
| Indica I | 375 | 49.87% | 50.13% |
| Indica II | 213 | 29.58% | 70.42% |
| Indica Intermediate | 211 | 34.60% | 65.40% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 95.74% | 4.26% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 21.43% | 78.57% |
| Intermediate | 41 | 46.34% | 53.66% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1003401283 | C->T | INTERGENIC | None |