Detailed information of SNP:
|
SNP ID:
sf1003402344(Gbrowse)
Chromosome: chr10 Position: 3402344 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1417 | 60.20% | 39.80% |
| All Indica | 797 | 39.77% | 60.23% |
| All Japonica | 497 | 98.99% | 1.01% |
| Aus | 67 | 10.45% | 89.55% |
| Indica I | 374 | 48.93% | 51.07% |
| Indica II | 213 | 28.64% | 71.36% |
| Indica Intermediate | 210 | 34.76% | 65.24% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 95.74% | 4.26% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 54.76% | 45.24% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1003402344 | G->A | INTERGENIC | None |