Detailed information of SNP:
|
SNP ID:
sf1003410924(Gbrowse)
Chromosome: chr10 Position: 3410924 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1418 | 60.16% | 39.84% |
| All Indica | 798 | 39.60% | 60.40% |
| All Japonica | 497 | 98.99% | 1.01% |
| Aus | 67 | 10.45% | 89.55% |
| Indica I | 375 | 48.53% | 51.47% |
| Indica II | 213 | 28.17% | 71.83% |
| Indica Intermediate | 210 | 35.24% | 64.76% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 95.74% | 4.26% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 57.14% | 42.86% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1003410924 | A->G | INTERGENIC | None |