Detailed information of SNP:
|
SNP ID:
sf1003423014(Gbrowse)
Chromosome: chr10 Position: 3423014 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1419 | 63.50% | 36.50% |
| All Indica | 799 | 61.70% | 38.30% |
| All Japonica | 497 | 59.36% | 40.64% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 52.27% | 47.73% |
| Indica II | 213 | 72.77% | 27.23% |
| Indica Intermediate | 211 | 67.30% | 32.70% |
| Temperate Japonica | 335 | 45.37% | 54.63% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 73.53% | 26.47% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 42 | 83.33% | 16.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1003423014 | G->A | INTERGENIC | None |