Detailed information of SNP:
|
SNP ID:
sf1003423843(Gbrowse)
Chromosome: chr10 Position: 3423843 |
Major allele:
G
Minor allele: C Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1419 | 58.84% | 41.16% |
| All Indica | 799 | 39.80% | 60.20% |
| All Japonica | 497 | 99.20% | 0.80% |
| Aus | 67 | 5.97% | 94.03% |
| Indica I | 375 | 48.53% | 51.47% |
| Indica II | 213 | 28.64% | 71.36% |
| Indica Intermediate | 211 | 35.55% | 64.45% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 95.74% | 4.26% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 21.43% | 78.57% |
| Intermediate | 42 | 40.48% | 59.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1003423843 | G->C | LOC_Os10g06610(LOC_Os10g06610.1) | INTRON |