Detailed information of SNP:
|
SNP ID:
sf1003431856(Gbrowse)
Chromosome: chr10 Position: 3431856 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 60.68% | 39.32% |
| All Indica | 799 | 40.68% | 59.32% |
| All Japonica | 497 | 98.99% | 1.01% |
| Aus | 67 | 11.94% | 88.06% |
| Indica I | 375 | 49.07% | 50.93% |
| Indica II | 213 | 28.64% | 71.36% |
| Indica Intermediate | 211 | 37.91% | 62.09% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 95.74% | 4.26% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 52.38% | 47.62% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1003431856 | G->T | INTERGENIC | None |