Detailed information of SNP:
|
SNP ID:
sf1003435190(Gbrowse)
Chromosome: chr10 Position: 3435190 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1417 | 55.19% | 44.81% |
| All Indica | 797 | 61.23% | 38.77% |
| All Japonica | 497 | 41.45% | 58.55% |
| Aus | 67 | 89.55% | 10.45% |
| Indica I | 374 | 53.21% | 46.79% |
| Indica II | 213 | 71.83% | 28.17% |
| Indica Intermediate | 210 | 64.76% | 35.24% |
| Temperate Japonica | 335 | 54.93% | 45.07% |
| Tropical Japonica | 94 | 5.32% | 94.68% |
| Japonica Intermediate | 68 | 25.00% | 75.00% |
| Group VI/Aromatic | 14 | 21.43% | 78.57% |
| Intermediate | 42 | 59.52% | 40.48% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1003435190 | C->T | INTERGENIC | None |