Detailed information of SNP:
|
SNP ID:
sf1003435787(Gbrowse)
Chromosome: chr10 Position: 3435787 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1419 | 54.19% | 45.81% |
| All Indica | 799 | 59.95% | 40.05% |
| All Japonica | 497 | 41.05% | 58.95% |
| Aus | 67 | 89.55% | 10.45% |
| Indica I | 375 | 52.27% | 47.73% |
| Indica II | 213 | 69.48% | 30.52% |
| Indica Intermediate | 211 | 63.98% | 36.02% |
| Temperate Japonica | 335 | 54.33% | 45.67% |
| Tropical Japonica | 94 | 5.32% | 94.68% |
| Japonica Intermediate | 68 | 25.00% | 75.00% |
| Group VI/Aromatic | 14 | 21.43% | 78.57% |
| Intermediate | 42 | 54.76% | 45.24% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1003435787 | G->A | INTERGENIC | None |