Detailed information of SNP:
|
SNP ID:
sf1003458982(Gbrowse)
Chromosome: chr10 Position: 3458982 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1384 | 53.97% | 46.03% |
| All Indica | 766 | 83.94% | 16.06% |
| All Japonica | 497 | 1.01% | 98.99% |
| Aus | 65 | 92.31% | 7.69% |
| Indica I | 364 | 86.81% | 13.19% |
| Indica II | 200 | 84.50% | 15.50% |
| Indica Intermediate | 202 | 78.22% | 21.78% |
| Temperate Japonica | 335 | 0.00% | 100.00% |
| Tropical Japonica | 94 | 4.26% | 95.74% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 42 | 66.67% | 33.33% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1003458982 | G->A | LOC_Os10g06670(LOC_Os10g06670.1) | INTRON |