Detailed information of SNP:
|
SNP ID:
sf1003460155(Gbrowse)
Chromosome: chr10 Position: 3460155 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1417 | 54.13% | 45.87% |
| All Indica | 798 | 82.83% | 17.17% |
| All Japonica | 497 | 1.41% | 98.59% |
| Aus | 66 | 90.91% | 9.09% |
| Indica I | 375 | 86.13% | 13.87% |
| Indica II | 213 | 81.69% | 18.31% |
| Indica Intermediate | 210 | 78.10% | 21.90% |
| Temperate Japonica | 335 | 0.30% | 99.70% |
| Tropical Japonica | 94 | 5.32% | 94.68% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 42 | 66.67% | 33.33% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1003460155 | T->C | INTERGENIC | None |