Detailed information of SNP:
|
SNP ID:
sf1003461010(Gbrowse)
Chromosome: chr10 Position: 3461010 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 77.79% | 22.21% |
| All Indica | 799 | 86.48% | 13.52% |
| All Japonica | 496 | 59.68% | 40.32% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 88.27% | 11.73% |
| Indica II | 213 | 87.32% | 12.68% |
| Indica Intermediate | 211 | 82.46% | 17.54% |
| Temperate Japonica | 334 | 45.21% | 54.79% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 76.47% | 23.53% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 42 | 90.48% | 9.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1003461010 | G->A | INTERGENIC | None |