Detailed information of SNP:
|
SNP ID:
sf1003461851(Gbrowse)
Chromosome: chr10 Position: 3461851 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1419 | 57.08% | 42.92% |
| All Indica | 799 | 61.33% | 38.67% |
| All Japonica | 497 | 46.88% | 53.12% |
| Aus | 67 | 89.55% | 10.45% |
| Indica I | 375 | 53.07% | 46.93% |
| Indica II | 213 | 71.83% | 28.17% |
| Indica Intermediate | 211 | 65.40% | 34.60% |
| Temperate Japonica | 335 | 55.82% | 44.18% |
| Tropical Japonica | 94 | 24.47% | 75.53% |
| Japonica Intermediate | 68 | 33.82% | 66.18% |
| Group VI/Aromatic | 14 | 21.43% | 78.57% |
| Intermediate | 42 | 57.14% | 42.86% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1003461851 | C->T | LOC_Os10g06680(LOC_Os10g06680.1) | UTR_5_PRIME |