Detailed information of SNP:
|
SNP ID:
sf1003463508(Gbrowse)
Chromosome: chr10 Position: 3463508 |
Major allele:
C
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1418 | 57.76% | 42.24% |
| All Indica | 799 | 61.95% | 38.05% |
| All Japonica | 497 | 47.08% | 52.92% |
| Aus | 67 | 91.04% | 8.96% |
| Indica I | 375 | 54.40% | 45.60% |
| Indica II | 213 | 71.83% | 28.17% |
| Indica Intermediate | 211 | 65.40% | 34.60% |
| Temperate Japonica | 335 | 55.82% | 44.18% |
| Tropical Japonica | 94 | 24.47% | 75.53% |
| Japonica Intermediate | 68 | 35.29% | 64.71% |
| Group VI/Aromatic | 14 | 21.43% | 78.57% |
| Intermediate | 41 | 63.41% | 36.59% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1003463508 | G->C | LOC_Os10g06690(LOC_Os10g06690.1) | UTR_3_PRIME |