Detailed information of SNP:
|
SNP ID:
sf1003464356(Gbrowse)
Chromosome: chr10 Position: 3464356 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1417 | 57.66% | 42.34% |
| All Indica | 798 | 39.10% | 60.90% |
| All Japonica | 497 | 93.56% | 6.44% |
| Aus | 67 | 10.45% | 89.55% |
| Indica I | 374 | 48.40% | 51.60% |
| Indica II | 213 | 27.70% | 72.30% |
| Indica Intermediate | 211 | 34.12% | 65.88% |
| Temperate Japonica | 335 | 98.81% | 1.19% |
| Tropical Japonica | 94 | 76.60% | 23.40% |
| Japonica Intermediate | 68 | 91.18% | 8.82% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 46.34% | 53.66% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1003464356 | C->T | INTERGENIC | None |