Detailed information of SNP:
|
SNP ID:
sf1003466314(Gbrowse)
Chromosome: chr10 Position: 3466314 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 80.25% | 19.75% |
| All Indica | 799 | 99.25% | 0.75% |
| All Japonica | 497 | 47.08% | 52.92% |
| Aus | 67 | 94.03% | 5.97% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 99.06% | 0.94% |
| Indica Intermediate | 211 | 98.10% | 1.90% |
| Temperate Japonica | 335 | 56.12% | 43.88% |
| Tropical Japonica | 94 | 23.40% | 76.60% |
| Japonica Intermediate | 68 | 35.29% | 64.71% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 82.93% | 17.07% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1003466314 | T->C | INTERGENIC | None |