Detailed information of SNP:
|
SNP ID:
sf1003469156(Gbrowse)
Chromosome: chr10 Position: 3469156 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1419 | 50.60% | 49.40% |
| All Indica | 799 | 49.69% | 50.31% |
| All Japonica | 497 | 46.88% | 53.12% |
| Aus | 67 | 88.06% | 11.94% |
| Indica I | 375 | 44.00% | 56.00% |
| Indica II | 213 | 59.62% | 40.38% |
| Indica Intermediate | 211 | 49.76% | 50.24% |
| Temperate Japonica | 335 | 55.82% | 44.18% |
| Tropical Japonica | 94 | 24.47% | 75.53% |
| Japonica Intermediate | 68 | 33.82% | 66.18% |
| Group VI/Aromatic | 14 | 21.43% | 78.57% |
| Intermediate | 42 | 61.90% | 38.10% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1003469156 | G->A | INTERGENIC | None |