Detailed information of SNP:
|
SNP ID:
sf1003477429(Gbrowse)
Chromosome: chr10 Position: 3477429 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1321 | 81.45% | 18.55% |
| All Indica | 702 | 97.86% | 2.14% |
| All Japonica | 497 | 54.73% | 45.27% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 339 | 96.76% | 3.24% |
| Indica II | 186 | 99.46% | 0.54% |
| Indica Intermediate | 177 | 98.31% | 1.69% |
| Temperate Japonica | 335 | 44.48% | 55.52% |
| Tropical Japonica | 94 | 81.91% | 18.09% |
| Japonica Intermediate | 68 | 67.65% | 32.35% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 41 | 95.12% | 4.88% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1003477429 | A->G | INTERGENIC | None |