Detailed information of SNP:
|
SNP ID:
sf1003483890(Gbrowse)
Chromosome: chr10 Position: 3483890 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1417 | 74.59% | 25.41% |
| All Indica | 797 | 86.32% | 13.68% |
| All Japonica | 497 | 54.73% | 45.27% |
| Aus | 67 | 92.54% | 7.46% |
| Indica I | 374 | 87.97% | 12.03% |
| Indica II | 213 | 86.38% | 13.62% |
| Indica Intermediate | 210 | 83.33% | 16.67% |
| Temperate Japonica | 335 | 44.48% | 55.52% |
| Tropical Japonica | 94 | 81.91% | 18.09% |
| Japonica Intermediate | 68 | 67.65% | 32.35% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 83.33% | 16.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1003483890 | T->C | INTERGENIC | None |