Detailed information of SNP:
|
SNP ID:
sf1003485684(Gbrowse)
Chromosome: chr10 Position: 3485684 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1345 | 93.90% | 6.10% |
| All Indica | 795 | 99.62% | 0.38% |
| All Japonica | 428 | 82.24% | 17.76% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 372 | 99.46% | 0.54% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 210 | 99.52% | 0.48% |
| Temperate Japonica | 271 | 74.17% | 25.83% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 63 | 90.48% | 9.52% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 41 | 97.56% | 2.44% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1003485684 | G->A | INTERGENIC | None |