Detailed information of SNP:
|
SNP ID:
sf1003490076(Gbrowse)
Chromosome: chr10 Position: 3490076 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1415 | 55.76% | 44.24% |
| All Indica | 798 | 48.37% | 51.63% |
| All Japonica | 494 | 60.32% | 39.68% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 48.53% | 51.47% |
| Indica II | 212 | 54.72% | 45.28% |
| Indica Intermediate | 211 | 41.71% | 58.29% |
| Temperate Japonica | 333 | 46.25% | 53.75% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 67 | 76.12% | 23.88% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 42 | 64.29% | 35.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1003490076 | G->A | INTERGENIC | None |