Detailed information of SNP:
|
SNP ID:
sf1003495737(Gbrowse)
Chromosome: chr10 Position: 3495737 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 58.84% | 41.16% |
| All Indica | 799 | 62.20% | 37.80% |
| All Japonica | 497 | 46.48% | 53.52% |
| Aus | 67 | 94.03% | 5.97% |
| Indica I | 375 | 54.67% | 45.33% |
| Indica II | 213 | 71.83% | 28.17% |
| Indica Intermediate | 211 | 65.88% | 34.12% |
| Temperate Japonica | 335 | 55.52% | 44.48% |
| Tropical Japonica | 94 | 23.40% | 76.60% |
| Japonica Intermediate | 68 | 33.82% | 66.18% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 71.43% | 28.57% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1003495737 | T->C | INTERGENIC | None |