Detailed information of SNP:
|
SNP ID:
sf1003509953(Gbrowse)
Chromosome: chr10 Position: 3509953 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1419 | 50.67% | 49.33% |
| All Indica | 799 | 51.44% | 48.56% |
| All Japonica | 497 | 58.75% | 41.25% |
| Aus | 67 | 5.97% | 94.03% |
| Indica I | 375 | 56.80% | 43.20% |
| Indica II | 213 | 41.78% | 58.22% |
| Indica Intermediate | 211 | 51.66% | 48.34% |
| Temperate Japonica | 335 | 45.37% | 54.63% |
| Tropical Japonica | 94 | 94.68% | 5.32% |
| Japonica Intermediate | 68 | 75.00% | 25.00% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 28.57% | 71.43% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1003509953 | T->C | LOC_Os10g06750(LOC_Os10g06750.1) | INTRON |