Detailed information of SNP:
|
SNP ID:
sf1003520273(Gbrowse)
Chromosome: chr10 Position: 3520273 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1402 | 64.76% | 35.24% |
| All Indica | 782 | 55.75% | 44.25% |
| All Japonica | 497 | 78.27% | 21.73% |
| Aus | 67 | 89.55% | 10.45% |
| Indica I | 366 | 58.47% | 41.53% |
| Indica II | 210 | 60.95% | 39.05% |
| Indica Intermediate | 206 | 45.63% | 54.37% |
| Temperate Japonica | 335 | 96.42% | 3.58% |
| Tropical Japonica | 94 | 25.53% | 74.47% |
| Japonica Intermediate | 68 | 61.76% | 38.24% |
| Group VI/Aromatic | 14 | 21.43% | 78.57% |
| Intermediate | 42 | 47.62% | 52.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1003520273 | G->A | INTERGENIC | None |