Detailed information of SNP:
|
SNP ID:
sf1003520611(Gbrowse)
Chromosome: chr10 Position: 3520611 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1415 | 73.36% | 26.64% |
| All Indica | 798 | 76.94% | 23.06% |
| All Japonica | 494 | 76.32% | 23.68% |
| Aus | 67 | 4.48% | 95.52% |
| Indica I | 375 | 86.93% | 13.07% |
| Indica II | 213 | 61.50% | 38.50% |
| Indica Intermediate | 210 | 74.76% | 25.24% |
| Temperate Japonica | 333 | 95.50% | 4.50% |
| Tropical Japonica | 94 | 20.21% | 79.79% |
| Japonica Intermediate | 67 | 59.70% | 40.30% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 71.43% | 28.57% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1003520611 | G->A | INTERGENIC | None |