Detailed information of SNP:
|
SNP ID:
sf1003522039(Gbrowse)
Chromosome: chr10 Position: 3522039 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1416 | 60.59% | 39.41% |
| All Indica | 796 | 48.49% | 51.51% |
| All Japonica | 497 | 78.07% | 21.93% |
| Aus | 67 | 89.55% | 10.45% |
| Indica I | 375 | 49.87% | 50.13% |
| Indica II | 212 | 55.19% | 44.81% |
| Indica Intermediate | 209 | 39.23% | 60.77% |
| Temperate Japonica | 335 | 96.42% | 3.58% |
| Tropical Japonica | 94 | 24.47% | 75.53% |
| Japonica Intermediate | 68 | 61.76% | 38.24% |
| Group VI/Aromatic | 14 | 21.43% | 78.57% |
| Intermediate | 42 | 50.00% | 50.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1003522039 | C->T | INTERGENIC | None |