Detailed information of SNP:
|
SNP ID:
sf1003547033(Gbrowse)
Chromosome: chr10 Position: 3547033 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1403 | 93.44% | 6.56% |
| All Indica | 798 | 99.87% | 0.13% |
| All Japonica | 485 | 82.06% | 17.94% |
| Aus | 66 | 98.48% | 1.52% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 210 | 100.00% | 0.00% |
| Temperate Japonica | 335 | 96.42% | 3.58% |
| Tropical Japonica | 83 | 33.73% | 66.27% |
| Japonica Intermediate | 67 | 70.15% | 29.85% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 92.50% | 7.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1003547033 | C->T | INTERGENIC | None |