Detailed information of SNP:
|
SNP ID:
sf1003556177(Gbrowse)
Chromosome: chr10 Position: 3556177 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1279 | 81.24% | 18.76% |
| All Indica | 684 | 67.11% | 32.89% |
| All Japonica | 476 | 97.69% | 2.31% |
| Aus | 65 | 96.92% | 3.08% |
| Indica I | 322 | 71.12% | 28.88% |
| Indica II | 190 | 65.26% | 34.74% |
| Indica Intermediate | 172 | 61.63% | 38.37% |
| Temperate Japonica | 332 | 98.80% | 1.20% |
| Tropical Japonica | 81 | 93.83% | 6.17% |
| Japonica Intermediate | 63 | 96.83% | 3.17% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 95.00% | 5.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1003556177 | A->G | INTERGENIC | None |