Detailed information of SNP:
|
SNP ID:
sf1003598597(Gbrowse)
Chromosome: chr10 Position: 3598597 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1413 | 74.24% | 25.76% |
| All Indica | 797 | 61.48% | 38.52% |
| All Japonica | 497 | 94.37% | 5.63% |
| Aus | 67 | 95.52% | 4.48% |
| Indica I | 374 | 60.16% | 39.84% |
| Indica II | 213 | 66.67% | 33.33% |
| Indica Intermediate | 210 | 58.57% | 41.43% |
| Temperate Japonica | 335 | 99.10% | 0.90% |
| Tropical Japonica | 94 | 79.79% | 20.21% |
| Japonica Intermediate | 68 | 91.18% | 8.82% |
| Group VI/Aromatic | 14 | 21.43% | 78.57% |
| Intermediate | 38 | 60.53% | 39.47% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1003598597 | C->T | LOC_Os10g06910(LOC_Os10g06910.1) | INTRON |