Detailed information of SNP:



SNP ID: sf1003602662(Gbrowse)

Chromosome: chr10

Position: 3602662
Major allele: A

Minor allele: G

Reference allele: A

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of A(major allele)Frequency of G(minor allele)
All1418 74.89% 25.11%
All Indica799 62.33% 37.67%
All Japonica497 94.77% 5.23%
Aus67 95.52% 4.48%
Indica I375 60.80% 39.20%
Indica II213 67.14% 32.86%
Indica Intermediate211 60.19% 39.81%
Temperate Japonica335 99.10% 0.90%
Tropical Japonica94 81.91% 18.09%
Japonica Intermediate68 91.18% 8.82%
Group VI/Aromatic14 21.43% 78.57%
Intermediate41 63.41% 36.59%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf1003602662 A->G INTERGENIC None