Detailed information of SNP:
|
SNP ID:
sf1003602662(Gbrowse)
Chromosome: chr10 Position: 3602662 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1418 | 74.89% | 25.11% |
| All Indica | 799 | 62.33% | 37.67% |
| All Japonica | 497 | 94.77% | 5.23% |
| Aus | 67 | 95.52% | 4.48% |
| Indica I | 375 | 60.80% | 39.20% |
| Indica II | 213 | 67.14% | 32.86% |
| Indica Intermediate | 211 | 60.19% | 39.81% |
| Temperate Japonica | 335 | 99.10% | 0.90% |
| Tropical Japonica | 94 | 81.91% | 18.09% |
| Japonica Intermediate | 68 | 91.18% | 8.82% |
| Group VI/Aromatic | 14 | 21.43% | 78.57% |
| Intermediate | 41 | 63.41% | 36.59% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1003602662 | A->G | INTERGENIC | None |